API reference

This page gives an overview of all public precellar objects, functions and methods.

Assay data

assays.list_cage()	Lists all available datasets.
assays.retrieve_cage(id)	Retrieves all datasets.
assays.list_rna()	Lists all available datasets.
assays.retrieve_rna(id)	Retrieves all datasets.

Enhancer data

enhancer.Dataset(id, results)	Represents a dataset containing screening results.
enhancer.ScreeningResult(sample_term_id, ...)	Represents a screening result from a dataset.
enhancer.concatenate(results)	Concatenates multiple ScreeningResult objects into a single one.
enhancer.list_enhancer()	Lists all available datasets.
enhancer.retrieve_enhancer([id, p_value])	Retrieves all datasets.

eQTL data

eqtl.list_eqtl()	Lists all available datasets.
eqtl.retrieve_eqtl(id)	Retrieves all datasets.

Genome data

genome.fetch_genome_fasta(name)	Fetches the genome FASTA file for the specified genome assembly.
genome.fetch_genome_annotation(name)	Fetches the genome annotation file for the specified genome assembly.