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  • gdata.W5Z
    • gdata.W5Z.attr
    • gdata.W5Z.close
    • gdata.W5Z.compute_stat
    • gdata.W5Z.keys
    • gdata.W5Z.list_attrs
    • gdata.W5Z.update_stat
    • gdata.W5Z.verify
  • gdata.GenomeDataLoader
    • gdata.GenomeDataLoader.batch_size
    • gdata.GenomeDataLoader.data
    • gdata.GenomeDataLoader.resolution
    • gdata.GenomeDataLoader.segments
    • gdata.GenomeDataLoader.shuffle
    • gdata.GenomeDataLoader.target_length
    • gdata.GenomeDataLoader.tracks
    • gdata.GenomeDataLoader.window_size
    • gdata.GenomeDataLoader.copy
    • gdata.GenomeDataLoader.difference
    • gdata.GenomeDataLoader.hist
    • gdata.GenomeDataLoader.intersection
    • gdata.GenomeDataLoader.plot
  • gdata.GenomeDataLoaderMap
    • gdata.GenomeDataLoaderMap.batch_size
    • gdata.GenomeDataLoaderMap.n_tracks
    • gdata.GenomeDataLoaderMap.segments
    • gdata.GenomeDataLoaderMap.difference
    • gdata.GenomeDataLoaderMap.intersection
    • gdata.GenomeDataLoaderMap.keys
  • gdata.CatGenomeDataLoader
    • gdata.CatGenomeDataLoader.n_tracks
  • gdata.GenomeDataBuilder
    • gdata.GenomeDataBuilder.add_file
    • gdata.GenomeDataBuilder.add_files
    • gdata.GenomeDataBuilder.finish
    • gdata.GenomeDataBuilder.segments
    • gdata.GenomeDataBuilder.tracks
  • gdata.utils.Gene
    • gdata.utils.Gene.chrom
    • gdata.utils.Gene.end
    • gdata.utils.Gene.gene_id
    • gdata.utils.Gene.gene_name
    • gdata.utils.Gene.is_coding
    • gdata.utils.Gene.start
    • gdata.utils.Gene.strand
    • gdata.utils.Gene.get_tss
  • gdata.utils.Transcript
    • gdata.utils.Transcript.chrom
    • gdata.utils.Transcript.end
    • gdata.utils.Transcript.gene_id
    • gdata.utils.Transcript.gene_name
    • gdata.utils.Transcript.is_coding
    • gdata.utils.Transcript.start
    • gdata.utils.Transcript.strand
    • gdata.utils.Transcript.transcript_id
    • gdata.utils.Transcript.transcript_name
    • gdata.utils.Transcript.get_tss
  • gdata.utils.read_genes
  • gdata.utils.read_transcripts
  • gdata.utils.bw_to_w5z
  • gdata.utils.bam_cov
  • API reference
  • gdata.utils.Gene

gdata.utils.Gene#

class gdata.utils.Gene#

Position is 0-based.

Attributes

chrom

end

gene_id

gene_name

is_coding

start

strand

Methods

get_tss()

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