API reference

This page gives an overview of all public precellar objects, functions and methods.

Core Classes

W5Z(self, /, filename[, mode])	W5Z object is a zfp compressed basepair resolution data format for representing genome-wide * coverage data, such as ChIP-seq, ATAC-seq, and other genomic signals.
GenomeDataLoader(self, /, location, *[, ...])	A dataloader for genomic data, allowing for efficient retrieval of genomic sequences and their associated values.
GenomeDataLoaderMap(self, /, loaders, *[, ...])	A dictionary-like class for loading multiple genomic datasets simultaneously.
CatGenomeDataLoader(self, /, loaders, *[, ...])	This class combines multiple GenomeDataLoaderMap instances into a single loader.
GenomeDataBuilder(self, /, location, ...[, ...])	Represents a builder for genomic data, allowing for the creation and management of genomic datasets.

Utilities

utils.Transcript	Position is 0-based.
utils.bw_to_w5z(input, output, *[, zfp, ...])	Formats the sum of two numbers as string.
utils.bam_cov(input, output, *[, output2, ...])
utils.read_transcripts(gff_file, *[, ...])