Index A | B | C | D | E | G | H | I | K | L | N | O | P | R | S | T | U | V | W A add_file() (gdata.GenomeDataBuilder method) add_files() (gdata.GenomeDataBuilder method) attr() (gdata.W5Z method) B bam_cov() (in module gdata.utils) batch_size (gdata.GenomeDataLoader attribute) (gdata.GenomeDataLoaderMap attribute) bw_to_w5z() (in module gdata.utils) C CatGenomeDataLoader (class in gdata) chrom (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) chroms() (gdata.GenomeDataBuilder method) close() (gdata.W5Z method) compress() (gdata.GenomeDataBuilder method) compute_stat() (gdata.W5Z method) copy() (gdata.GenomeDataLoader method) D data (gdata.GenomeDataLoader attribute) difference() (gdata.GenomeDataLoader method) (gdata.GenomeDataLoaderMap method) E end (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) G Gene (class in gdata.utils) gene_id (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) gene_name (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) GenomeDataBuilder (class in gdata) GenomeDataLoader (class in gdata) GenomeDataLoaderMap (class in gdata) get_chunk_size() (gdata.GenomeDataBuilder method) get_tss() (gdata.utils.Gene method) (gdata.utils.Transcript method) H hist() (gdata.GenomeDataLoader method) I intersection() (gdata.GenomeDataLoader method) (gdata.GenomeDataLoaderMap method) is_coding (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) K keys() (gdata.GenomeDataLoaderMap method) (gdata.W5Z method) L list_attrs() (gdata.W5Z method) N n_tracks (gdata.CatGenomeDataLoader attribute) (gdata.GenomeDataLoaderMap attribute) O open() (gdata.GenomeDataBuilder method) P plot() (gdata.GenomeDataLoader method) R read_genes() (in module gdata.utils) read_transcripts() (in module gdata.utils) resolution (gdata.GenomeDataLoader attribute) S segments (gdata.GenomeDataLoader attribute) (gdata.GenomeDataLoaderMap attribute) segments() (gdata.GenomeDataBuilder method) seq (gdata.GenomeDataLoader attribute) start (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) strand (gdata.utils.Gene attribute) (gdata.utils.Transcript attribute) T tracks (gdata.GenomeDataLoader attribute) tracks() (gdata.GenomeDataBuilder method) Transcript (class in gdata.utils) transcript_id (gdata.utils.Transcript attribute) transcript_name (gdata.utils.Transcript attribute) U update_stat() (gdata.W5Z method) V verify() (gdata.W5Z method) W W5Z (class in gdata) window_size (gdata.GenomeDataLoader attribute)