precellar.aligners.BWAMEM2

class precellar.aligners.BWAMEM2(index_path)

The BWA-MEM2 aligner.

BWA-MEM2 is a fast and accurate genome aligner. It is used to align reads to a reference genome.

Parameters:

index_path (str) – The path to the BWA-MEM2 index directory.

Attributes

max_occurrence	The maximum number of occurrences of a seed in the reference.
min_seed_length	The minimum seed length of the aligner.

Methods

logging(enable)

Whether to output log messages.