API reference

This page gives an overview of all public precellar objects, functions and methods.

Assay

Assay(path)

A Assay object.

Core functions

align(assay, genome_index, *, modality, output)	Align fastq reads to the reference genome and generate unique fragments.
make_fastq(assay, *, modality, out_dir[, ...])	Generate consolidated fastq files from the sequencing specification.

Utilities

utils.strip_barcode_from_fastq(in_fq, ...[, ...])

Remove barcode from the read names of fastq records.