Skip to main content
Ctrl+K

precellar

  • Installation
  • Tutorials
  • API reference
  • GitHub
  • Installation
  • Tutorials
  • API reference
  • GitHub

Section Navigation

  • Preprocess 10X Genomics Gene Expression + ATAC Data
  • 10X ATAC-seq pipeline
  • Processing barcoded Fastq files
  • Smart-seq2
  • Cel-Seq2
  • Set up
  • Write a seqspec file for your custom datasets
  • Tutorials

Tutorials#

  • Preprocess 10X Genomics Gene Expression + ATAC Data
    • Create the SeqSpec object
    • Align ATAC reads
  • Align RNA reads
  • 10X ATAC-seq pipeline
    • Generate cell by bin matrix
  • Processing barcoded Fastq files
    • Extracting cell barcodes from read names
  • Smart-seq2
  • Cel-Seq2
    • SeqSpec
    • Precellar pipeline
    • Downstream analysis
  • Set up
  • Prepare seqspec and read
  • Alignment
  • Write a seqspec file for your custom datasets
    • Introduction to seqspec
    • Notes on writing seqspec files

previous

Installation

next

Preprocess 10X Genomics Gene Expression + ATAC Data

© Copyright 2024-2024, Regulatory Genomics Lab, Westlake University.

Built with the PyData Sphinx Theme 0.15.4.