Tutorials# Analyzing 10x Genomics scRNA-seq Data 10X ATAC-seq pipeline Generate cell by bin matrix Preprocess 10X Genomics Gene Expression + ATAC Data Create the SeqSpec object Align ATAC reads Align RNA reads Processing barcoded Fastq files Extracting cell barcodes from read names Smart-seq2 Cel-Seq2 SeqSpec Precellar pipeline Downstream analysis Set up Prepare seqspec and read Alignment Write a seqspec file for your custom datasets Introduction to seqspec Notes on writing seqspec files