Index A | B | D | F | I | L | M | N | S | T | U | W A add_illumina_reads() (precellar.Assay method) align() (in module precellar) Assay (class in precellar) B bam_to_fastq() (in module precellar.utils) BWAMEM2 (class in precellar.aligners) D delete_read() (precellar.Assay method) description (precellar.Assay attribute) doi (precellar.Assay attribute) F filename (precellar.Assay attribute) I id (precellar.Assay attribute) L logging() (precellar.aligners.BWAMEM2 method) M make_bwa_index() (in module precellar) make_fastq() (in module precellar) max_occurrence (precellar.aligners.BWAMEM2 attribute) merge_fastq_files() (in module precellar.utils) min_seed_length (precellar.aligners.BWAMEM2 attribute) modalities() (precellar.Assay method) N name (precellar.Assay attribute) S save() (precellar.Assay method) sequence_kit (precellar.Assay attribute) sequence_protocol (precellar.Assay attribute) STAR (class in precellar.aligners) strip_barcode_from_fastq() (in module precellar.utils) T to_yaml() (precellar.Assay method) U update_read() (precellar.Assay method) W whitelist() (precellar.Assay method)