Computational resources
We build open-sourced computational tools to facilitate and accelerate research, innovation, and problem-solving in the field of regulatory genomics. By providing these tools freely and openly, we aim to foster collaboration, reproducibility, and transparency in scientific and technological endeavors, and empower individuals and communities to tackle some of the most pressing challenges in their research.
Featured
SnapATAC2 is Python/Rust package for end-to-end single-cell epigenomics analysis, including preprocessing, dimension reduction, clustering, data integration, peak calling, differential analysis, motif analysis, regulatory network analysis, and multimodal analysis.
Taiji is an integrative analysis pipeline for analyzing bulk/single-cell ATAC-seq and RNA-seq data.